Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : W9SLX1

dbSWEET id: dbswt_279

Accession:   W9SLX1

Uniprot status:   Unreviewed

Organism:   Morus notabilis

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ fabids ⇒ Rosales ⇒ Moraceae ⇒ Morus.

Sequence Information back to top


Sequence length:   254

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VSVC           CVV:   369       CHI:   10.1

Fasta sequence:

>tr|W9SLX1|W9SLX1_9ROSA|Unreviewed|Morus_notabilis|254
MVLGNIVSFLVYLAPLPTFYRIFRKKSTEGFQAIPYSVALFSAMLTLYYGILKGLPNGVM
IITINSIGCAIESIYLIVFLIYAPGKVRIYTIKLLVLFNMGAYGLILLSTSFVGKISQRV
TVVGWICAVFSVCVFAAPLSIIRLVIKTRSVEYMPFALSFCLTLCAVMWFFYGLLVNDFF
IASPNILGFLFGIAQMILYLVFKNSKKEVLPEFKLQEMPPNVAAQANAVQEATVINGNNI
PSSERNNNDVTMIV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   204

Alignment file: W9SLX1.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  W9SLX1_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.3% favored    5.6% allowed    .6% week    .6% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  W9SLX1_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.7% favored    6.1% allowed    1.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  W9SLX1_occluded.pdb

Procheck score ⇒ Ramachandran plot: 92.2% favored    6.7% allowed    1.1% week    .0% disallowed

Gene Informationback to top


Gene ID:   21403367     Total Exons:   5     Coding Exons:   5

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur