Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : W1P3E6

dbSWEET id: dbswt_429

Accession:   W1P3E6

Uniprot status:   Unreviewed

Organism:   Amborella trichopoda

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ basal Magnoliophyta ⇒ Amborellales ⇒ Amborellaceae ⇒ Amborella.

Sequence Information back to top


Sequence length:   271

Substrate Binding Site:   TNWN           CVV:   448       CHI:   -8.6

Selectivity Filter:   VSMN           CVV:   398       CHI:   1.8

Fasta sequence:

>tr|W1P3E6|W1P3E6_AMBTC|Unreviewed|Amborella_trichopoda|271
MEDLSFFFGILGNVISILVFASPIGTFQRVVKKKSTENFKGLPFVCTLLSTSLWSYYGLL
KPGGLLVLTVNGVGVAMEAIYVSLFLFYAPKNVKVKTAMLVLVLNVGFLGLVIMVTMLLL
HAPLRLQVVGFLSAALTLGMYASPMAVMRRVIVTKSVEYMPFFLFLNGGVWFLYSLLVGD
FFIGVPNGIGFILGATQLIVYAVYRNSKSTDQKPDMEELDTKHCFEIEMPRTDKNLEKAE
DNSIENVNLHKTSTGFTRGGEGETARARDEV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   206

Alignment file: W1P3E6.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  W1P3E6_inward.pdb

Procheck score ⇒ Ramachandran plot: 94.9% favored    4.0% allowed    .6% week    .6% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  W1P3E6_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.6% favored    6.3% allowed    1.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  W1P3E6_occluded.pdb

Procheck score ⇒ Ramachandran plot: 92.6% favored    5.1% allowed    .6% week    1.7% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur