Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : V7CB42

dbSWEET id: dbswt_900

Accession:   V7CB42

Uniprot status:   Unreviewed

Organism:   Phaseolus vulgaris

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ fabids ⇒ Fabales ⇒ Fabaceae ⇒ Papilionoideae ⇒ Phaseoleae ⇒ Phaseolus.

Sequence Information back to top


Sequence length:   229

Substrate Binding Site:   CNWN           CVV:   441       CHI:   -5.4

Selectivity Filter:   LNMN           CVV:   440       CHI:   -1.3

Fasta sequence:

>tr|V7CB42|V7CB42_PHAVU|Unreviewed|Phaseolus_vulgaris|229
MVNTNTIRTAVGIIGNVISFGLFMSPVPTFISIFKSKSVQNFKPDPYIATILNCGVWAFY
GLPFVTPDNTLVISINSFGFFLEIFYTTVFFVYSPWNKRRKIMLIFLAEIIFIALLVFLV
MTFVHTPKERKVIVGPICIVFNILMYFSPLTVMRQVIRTKSVKYMPFLLSFTNFANGIVW
TAYALLKWDPFIVIPNGLGTLSGLTQLILYVMYYKSTNWDEEDETSSNI

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   215

Alignment file: V7CB42.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  V7CB42_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.6% favored    5.3% allowed    .0% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  V7CB42_outward.pdb

Procheck score ⇒ Ramachandran plot: 93.1% favored    5.9% allowed    1.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  V7CB42_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.6% favored    6.4% allowed    .0% week    .0% disallowed

Gene Informationback to top


Gene ID:   18635472     Total Exons:   6     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur