Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : V4U5L5

dbSWEET id: dbswt_281

Accession:   V4U5L5

Uniprot status:   Unreviewed

Organism:   Citrus clementina

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Sapindales ⇒ Rutaceae ⇒ Aurantioideae ⇒ Citrus.

Sequence Information back to top


Sequence length:   275

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VSVC           CVV:   369       CHI:   10.1

Fasta sequence:

>tr|V4U5L5|V4U5L5_9ROSI|Unreviewed|Citrus_clementina|275
MAILGPHSVIIFGLLGNIVSFLVYLAPLPTFYRIFKKKSTQGFQSIPYSVALFSAMLLLY
YASLKGSNAFMLITINGIGCIIESLYLLFFMIYATKTAKIYTTKLLILFNIGALGLIVLL
TYLLSKSSDQRLTIVGWICAVFSVCVFAAPLSIIRQVIRTKSVEYMPFSLSCCLTICAGM
WLLYGLSIKDYYIATPNILGMAFGATQMILYLAYRTRRNSEILPVAAAVVDPKDREESNN
TGAADPRCNHHHRHDSSNGEVEIKAVETNQINHTA

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   2     Model end:   216

Alignment file: V4U5L5.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  V4U5L5_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.2% favored    4.7% allowed    2.1% week    .0% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  V4U5L5_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.1% favored    6.8% allowed    .5% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  V4U5L5_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.7% favored    5.2% allowed    .5% week    .5% disallowed

Gene Informationback to top


Gene ID:   18050162     Total Exons:   5     Coding Exons:   5

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR018179: SWEET10-like. IPR004316: SWEET_sugar_transpr. 

Panther:  PTHR10791:SF22

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur