Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : U6NKN8

dbSWEET id: dbswt_1243

Accession:   U6NKN8

Uniprot status:   Unreviewed

Organism:   Haemonchus contortus

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Ecdysozoa ⇒ Nematoda ⇒ Chromadorea ⇒ Rhabditida ⇒ Strongylida ⇒ Trichostrongyloidea ⇒ Haemonchidae ⇒ Haemonchinae ⇒ Haemonchus.

Sequence Information back to top


Sequence length:   226

Substrate Binding Site:   TNWN           CVV:   448       CHI:   -8.6

Selectivity Filter:   FMSL           CVV:   456       CHI:   7.7

Fasta sequence:

>tr|U6NKN8|U6NKN8_HAECO|Unreviewed|Haemonchus_contortus|226
MELTPMSIFTAWLGVFSISFTLMPFTMVLDWRRRGTADGFSSVNFVLPMLMTSCWLRHGY
MTNDNTNITINTINIAFFIFYIAAFAYYQPKRKYLYGQLLACAAVVKLVFMYVDMQKSDV
APDVMGSIAAAMQIASLAGGIYEIKRAISFGHTEYLPASFQYAMFLLIIQWLAFGLLTGN
QYIAIANAAALIVNVVTISLYFIYPPLTWRVPIIGTGPQLKEKKKE

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   206

Alignment file: U6NKN8.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  U6NKN8_inward.pdb

Procheck score ⇒ Ramachandran plot: 90.9% favored    7.5% allowed    .5% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  U6NKN8_outward.pdb

Procheck score ⇒ Ramachandran plot: 93.0% favored    7.0% allowed    .0% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  U6NKN8_occluded.pdb

Procheck score ⇒ Ramachandran plot: 90.3% favored    7.0% allowed    1.1% week    1.6% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur