Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : S4VA67

dbSWEET id: dbswt_242

Accession:   S4VA67

Uniprot status:   Unreviewed

Organism:   Brassica campestris

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Brassiceae ⇒ Brassica.

Sequence Information back to top


Sequence length:   270

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VSVN           CVV:   379       CHI:   4.1

Fasta sequence:

>tr|S4VA67|S4VA67_BRACM|Unreviewed|Brassica_campestris|270
MVFIKVHQLAFLFGLLGNIVSFGVFLSPVPTFYGIYKKKSSKGFQSIPYICALASATLLL
FYGIMKTHAYLIISINTFGCFIEISYLFLYIIYAPREARIFTLKLILICNIGGLGLLILL
VDLLIPKQHRVSTVGWVCAAYSLAVFASPLSVMRKVIRTKSVEYMPLLLSLSLTLNAVMW
FFYGLLIEDKFIAMPNILGFLFGIAQMILYMMYHDSKKTDLPKLTSTENQPTNITNLNEV
AIVAVELSDARAENVEGSVRPMTPNSSTTA

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   3     Model end:   215

Alignment file: S4VA67.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  S4VA67_inward.pdb

Procheck score ⇒ Ramachandran plot: 91.0% favored    6.9% allowed    1.1% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  S4VA67_outward.pdb

Procheck score ⇒ Ramachandran plot: 93.1% favored    6.4% allowed    .5% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  S4VA67_occluded.pdb

Procheck score ⇒ Ramachandran plot: 89.4% favored    9.0% allowed    1.1% week    .5% disallowed

Gene Informationback to top


Gene ID:   103857843     Total Exons:   6     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur