Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : R7VAF1

dbSWEET id: dbswt_1230

Accession:   R7VAF1

Uniprot status:   Unreviewed

Organism:   Capitella teleta

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Lophotrochozoa ⇒ Annelida ⇒ Polychaeta ⇒ Scolecida ⇒ Capitellida ⇒ Capitellidae ⇒ Capitella.

Sequence Information back to top


Sequence length:   211

Substrate Binding Site:   CNWN           CVV:   441       CHI:   -5.4

Selectivity Filter:   MSIC           CVV:   407       CHI:   8.1

Fasta sequence:

>tr|R7VAF1|R7VAF1_CAPTE|Unreviewed|Capitella_teleta|211
METVDIMEYVCLVVTLLMFCTGIVPCSSMYKSGSTKNVPFEIFLLSVVSCSGMFHYGLLI
NNMTLAFLNGVGLFLQICYVAVYLMCVRSKSWPMTLILLSAVYLLGLYYYLFAVVVYEPE
FSSTLGQSASLVTMFILCLPIFEVISNFRNKNCDGMPLVMLAGGTVCGASWLFYGMLLDD
PNIYAPNIPGVIVNALKLSAVALYSGKAKRY

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   206

Alignment file: R7VAF1.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  R7VAF1_inward.pdb

Procheck score ⇒ Ramachandran plot: 91.1% favored    6.1% allowed    .6% week    2.2% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  R7VAF1_outward.pdb

Procheck score ⇒ Ramachandran plot: 95.0% favored    2.2% allowed    1.7% week    1.1% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  R7VAF1_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.3% favored    5.0% allowed    1.7% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur