Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : R6J286

dbSWEET id: dbswt_1901

Accession:   R6J286

Uniprot status:   Unreviewed

Organism:   Azospirillum

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Proteobacteria ⇒ Alphaproteobacteria ⇒ Rhodospirillales ⇒ Rhodospirillaceae ⇒ Azospirillum ⇒ environmental samples.

Sequence Information back to top


Sequence length:   265

Substrate Binding Site:   LNLN           CVV:   440       CHI:   0.6

Selectivity Filter:   TGTG           CVV:   282       CHI:   -2.2

Fasta sequence:

>tr|R6J286|R6J286_9PROT|Unreviewed|Azospirillum| 265
MFDNIMFDEEILFTYIGYAAGLATILTFAIQILRIIETKNVTNLSSYMYIIYSLGLVCWF
AYGVYIDSYILLFSNLITFFCTFIILILIIYYDAEDKIERERRDDITTVYNRKYFEQAVP
EKIAQALVAKQNFALVMLKVDNLAEFRQKYGDKTADKALKQVGGALEKDLRGTDMVARYD
NEKFVIFLANSDEKGTKTVAGRLSENIKKLSVKINRKQNLDLTVSMGACSSKHAKALTDL
ISGANKALDNIPPRSKIKIQFCKNK

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   14     Model end:   91

Inward Open:

Template:   4X5M.pdb

Model structure:  R6J286_inward.pdb    Alignment file: R6J286_inw.pir

Procheck score ⇒ Ramachandran plot: 95.1% favored    4.2% allowed    .7% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  R6J286_outward.pdb    Alignment file: R6J286_out.pir

Procheck score ⇒ Ramachandran plot: 92.3% favored    7.0% allowed    .0% week    .7% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  R6J286_occluded.pdb    Alignment file: R6J286_occ.pir

Procheck score ⇒ Ramachandran plot: 97.2% favored    1.4% allowed    .0% week    1.4% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF00990: GGDEF PF03083: MtN3_slv 

Interpro:   IPR000160: GGDEF_dom. IPR029787: Nucleotide_cyclase. IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur