Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : N6UNU8

dbSWEET id: dbswt_1297

Accession:   N6UNU8

Uniprot status:   Unreviewed

Organism:   Dendroctonus ponderosae

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Ecdysozoa ⇒ Arthropoda ⇒ Hexapoda ⇒ Insecta ⇒ Pterygota ⇒ Neoptera ⇒ Endopterygota ⇒ Coleoptera ⇒ Polyphaga ⇒ Cucujiformia ⇒ Curculionidae ⇒ Scolytinae ⇒ Dendroctonus.

Sequence Information back to top


Sequence length:   450

Substrate Binding Site:   TNWN           CVV:   448       CHI:   -8.6

Selectivity Filter:   QSFV           CVV:   427       CHI:   2.7

Fasta sequence:

>tr|N6UNU8|N6UNU8_DENPD|Unreviewed|Dendroctonus_ponderosae|450
MLDEQLKNLLATTASISTVLQFLSGTITCQRIVRNKSTGEISAFPFVSGCLSTALWLRYG
FLIQDTSIILVNTIGVSLFFSYVLVLFLYSIKKVIQVLRQFLLSLGLLVAVLMKLHRMED
GAQAHQFLGYTCMAVTVLFFAAPFATLLQVIRSKSTDSLPYHLIVATFLVSLQWLIYGLM
LQDPFIQAPNFLGCVLSGLQLSLFLIYPAKAHGASPRQPLAALPQCPPHSYRSMTDDSKI
MGEVAQPRFEKSLGLLTSKFVSLLQKSKGGILDLKVAADILEVRQKRRIYDITNVLEGIG
LIEKKSKNSIQWKPYTVYRPASNAEDANSGGFTEKISRLKQKLARLDEYEHELDMHKIWI
NQSIRNTTEGNSQFLYLTLEDFAACYGQQDAVIAAKVPVNETRVAVSNNEGSFSLKIAST
GRPIDAYLVSERVLDGRQAGAPQAPPLHQP

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   209

Alignment file: N6UNU8.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  N6UNU8_inward.pdb

Procheck score ⇒ Ramachandran plot: 91.6% favored    7.4% allowed    .5% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  N6UNU8_outward.pdb

Procheck score ⇒ Ramachandran plot: 91.6% favored    6.8% allowed    1.1% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  N6UNU8_occluded.pdb

Procheck score ⇒ Ramachandran plot: 91.1% favored    6.8% allowed    1.6% week    .5% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005634 - nucleus

GO:0005667 - transcription factor complex

GO:0003677 - DNA binding

GO:0003700 - transcription factor activity sequence-specific DNA binding

GO:0008643 - carbohydrate transport

GO:0006351 - transcription DNA-templated

Family Classificationback to top


Pfam:   PF16421: E2F_CC-MB. PF02319: E2F_TDP. PF03083: MtN3_slv 

Interpro:   IPR015633: E2F. IPR032198: E2F_CC-MB. IPR003316: E2F_WHTH_DNA-bd_dom. IPR004316: SWEET_sugar_transpr. IPR011991: WHTH_DNA-bd_dom. 

Panther:  PTHR12081

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur