Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : M4D8E2

dbSWEET id: dbswt_517

Accession:   M4D8E2

Uniprot status:   Unreviewed

Organism:   Brassica rapa

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Brassiceae ⇒ Brassica.

Sequence Information back to top


Sequence length:   240

Substrate Binding Site:   SNWN           CVV:   428       CHI:   -8.7

Selectivity Filter:   VGMN           CVV:   373       CHI:   2.2

Fasta sequence:

>tr|M4D8E2|M4D8E2_BRARP|Unreviewed|Brassica_rapa|240
MAETSFYIGVIGNVISVLVFLSPVETFWKIVKRKSTEDYKSLPYICTLLGSSLWTYYGIV
TPGEYLVSTVNGFGSFVEIIYVSLFLIYAPRHLKLNTIVVVALLNVFFPIAAIAATRSAF
KDEKMRSQSMGFICAGLNIVMYGSPLSAMKTVVTTKSVKYMPFWLSFFLFLNGAIWAVYA
SLQHDVFLLVPNGVGFVFGTIQLILYGIYRNAKPAGLSNGSSEIAADEEEGLTSRAPLLS

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   211

Alignment file: M4D8E2.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  M4D8E2_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.0% favored    5.4% allowed    .5% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  M4D8E2_outward.pdb

Procheck score ⇒ Ramachandran plot: 91.4% favored    7.6% allowed    1.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  M4D8E2_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.0% favored    6.5% allowed    .5% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur