Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : M4CBQ8

dbSWEET id: dbswt_504

Accession:   M4CBQ8

Uniprot status:   Unreviewed

Organism:   Brassica rapa

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Brassiceae ⇒ Brassica.

Sequence Information back to top


Sequence length:   231

Substrate Binding Site:   SNWN           CVV:   428       CHI:   -8.7

Selectivity Filter:   LGMN           CVV:   392       CHI:   1.8

Fasta sequence:

>tr|M4CBQ8|M4CBQ8_BRARP|Unreviewed|Brassica_rapa|231
MAELSFYVGVIGNVISVLLFLSPVETFWKIVKRRSTEKYECLPYICTLMGSSLWTYYGIV
TPGEYLVSTVNGFGVLAESIYVLIFLFFVPKPKFLKTVALVLALNVIFPVITIVGTRTAF
GYAKTRSNSMGFICAALNIIMYGSPLSAIKTVVTTRSVKYMPFLLSFFLFLNGAIWAVYA
LLLHDVFLLVPNGMGFVLGTIQLLIYAFYRNAKPNIVDEEEALAPSQPLLS

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   211

Alignment file: M4CBQ8.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  M4CBQ8_inward.pdb

Procheck score ⇒ Ramachandran plot: 91.3% favored    5.4% allowed    2.2% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  M4CBQ8_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.4% favored    6.5% allowed    .5% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  M4CBQ8_occluded.pdb

Procheck score ⇒ Ramachandran plot: 94.0% favored    5.4% allowed    .5% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur