Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : M1ASY4

dbSWEET id: dbswt_272

Accession:   M1ASY4

Uniprot status:   Unreviewed

Organism:   Solanum tuberosum

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ asterids ⇒ lamiids ⇒ Solanales ⇒ Solanaceae ⇒ Solanoideae ⇒ Solaneae ⇒ Solanum.

Sequence Information back to top


Sequence length:   287

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VSVC           CVV:   369       CHI:   10.1

Fasta sequence:

>tr|M1ASY4|M1ASY4_SOLTU|Unreviewed|Solanum_tuberosum|287
MPLFTTIQLAFAFGILGNGVSFLVYLSPLPTFYRIFKRKSTEGFQSIPYSVSLFSAMLYL
YYAYLKKNEILLITINSFGTGIQLIYLTIFMIYATKSAKIFATNLLIGFNIVAFGAIVGL
TYIFAKENELRISIVGWICAVFSVSVFAAPLSIMRRVIQTKSVEFMPFPLSFFLTICAVM
WFFYGLLKKDMYIAMPNILGFSFGIAQMILYAIYRNRKQQVLPDLSLMDLKEIAIDMKAV
VVEIIQENVDDENKNKNKNKQEEVDSVDEKKDDNDKQDVVALTTSNV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   3     Model end:   216

Alignment file: M1ASY4.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  M1ASY4_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.7% favored    5.2% allowed    1.0% week    .0% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  M1ASY4_outward.pdb

Procheck score ⇒ Ramachandran plot: 91.6% favored    6.8% allowed    1.0% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  M1ASY4_occluded.pdb

Procheck score ⇒ Ramachandran plot: 91.6% favored    4.7% allowed    2.1% week    1.6% disallowed

Gene Informationback to top


Gene ID:   102582684     Total Exons:   6     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur