Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : L1PFH6

dbSWEET id: dbswt_1856

Accession:   L1PFH6

Uniprot status:   Unreviewed

Organism:   Actinomyces

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Actinobacteria ⇒ Actinomycetales ⇒ Actinomycetaceae ⇒ Actinomyces.

Sequence Information back to top


Sequence length:   87

Substrate Binding Site:   CPCP           CVV:   352       CHI:   1.8

Selectivity Filter:   ASAS           CVV:   280       CHI:   2

Fasta sequence:

>tr|L1PFH6|L1PFH6_9ACTO|Unreviewed|Actinomyces|87
MSKQKINRFVGSIGAFIGILVFIAYIPQIIANLQGEKAQPFQPLFAAFSCLIWVIYGWTK
EPKKDWILIIPNAAGVILGGLTFITSL

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   87

Inward Open:

Template:   4X5M.pdb

Model structure:  L1PFH6_inward.pdb    Alignment file: L1PFH6_inw.pir

Procheck score ⇒ Ramachandran plot: 89.5% favored    7.3% allowed    1.6% week    1.6% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  L1PFH6_outward.pdb    Alignment file: L1PFH6_out.pir

Procheck score ⇒ Ramachandran plot: 91.9% favored    6.5% allowed    .8% week    .8% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  L1PFH6_occluded.pdb    Alignment file: L1PFH6_occ.pir

Procheck score ⇒ Ramachandran plot: 85.5% favored    12.1% allowed    1.6% week    .8% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur