Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : L1NGM6

dbSWEET id: dbswt_1851

Accession:   L1NGM6

Uniprot status:   Unreviewed

Organism:   Porphyromonas catoniae

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Bacteroidetes ⇒ Bacteroidia ⇒ Bacteroidales ⇒ Porphyromonadaceae ⇒ Porphyromonas.

Sequence Information back to top


Sequence length:   87

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   SNSN           CVV:   338       CHI:   -8.6

Fasta sequence:

>tr|L1NGM6|L1NGM6_9PORP|Unreviewed|Porphyromonas catoniae|87
MDRSKFLTLLGTVASITAILMYVSYISTIQNNLSGSKGDPIQPLVAAINCTLWVLYALLK
KPKKDWPVAIANAPGILFGLITFFTAL

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   88

Inward Open:

Template:   4X5M.pdb

Model structure:  L1NGM6_inward.pdb    Alignment file: L1NGM6_inw.pir

Procheck score ⇒ Ramachandran plot: 89.4% favored    8.3% allowed    2.3% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  L1NGM6_outward.pdb    Alignment file: L1NGM6_out.pir

Procheck score ⇒ Ramachandran plot: 90.9% favored    7.6% allowed    .0% week    1.5% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  L1NGM6_occluded.pdb    Alignment file: L1NGM6_occ.pir

Procheck score ⇒ Ramachandran plot: 88.6% favored    10.6% allowed    .0% week    .8% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur