Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : J6HW72

dbSWEET id: dbswt_1836

Accession:   J6HW72

Uniprot status:   Unreviewed

Organism:   Capnocytophaga

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Bacteroidetes ⇒ Flavobacteriia ⇒ Flavobacteriales ⇒ Flavobacteriaceae ⇒ Capnocytophaga.

Sequence Information back to top


Sequence length:   96

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   ANAN           CVV:   326       CHI:   -3.4

Fasta sequence:

>tr|J6HW72|J6HW72_9FLAO|Unreviewed|Capnocytophaga|96
MDKFEEKQASGESKFIRILSVLAAVMAVAMYVAYIDQIQKTWGDATGPWLQPFVAGINCS
LWVAYGFLKRDRDYPIVFANLPGIILGFIAAYSAAF

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   20     Model end:   96

Inward Open:

Template:   4X5M.pdb

Model structure:  J6HW72_inward.pdb    Alignment file: J6HW72_inw.pir

Procheck score ⇒ Ramachandran plot: 91.4% favored    7.0% allowed    .0% week    1.6% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  J6HW72_outward.pdb    Alignment file: J6HW72_out.pir

Procheck score ⇒ Ramachandran plot: 86.7% favored    10.9% allowed    1.6% week    .8% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  J6HW72_occluded.pdb    Alignment file: J6HW72_occ.pir

Procheck score ⇒ Ramachandran plot: 92.2% favored    5.5% allowed    1.6% week    .8% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur