Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : J3JYD4

dbSWEET id: dbswt_1205

Accession:   J3JYD4

Uniprot status:   Unreviewed

Organism:   Dendroctonus ponderosae

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Ecdysozoa ⇒ Arthropoda ⇒ Hexapoda ⇒ Insecta ⇒ Pterygota ⇒ Neoptera ⇒ Endopterygota ⇒ Coleoptera ⇒ Polyphaga ⇒ Cucujiformia ⇒ Curculionidae ⇒ Scolytinae ⇒ Dendroctonus.

Sequence Information back to top


Sequence length:   216

Substrate Binding Site:   TNWN           CVV:   448       CHI:   -8.6

Selectivity Filter:   QSFV           CVV:   427       CHI:   2.7

Fasta sequence:

>tr|J3JYD4|J3JYD4_DENPD|Unreviewed|Dendroctonus_ponderosae|216
MLDEQLKNLLATTASISTVLQFLSGTITCQRIVRNKSTGEISAFPFVSGCLSTALWLRYG
FLIQDTSIILVNTIGVSLFFSYVLVLFLYSIKKIQVLRQFLLSLGLLVAVLMKLHRMEDG
AQAHQFLGYTCMAVTVLFFAAPFATLLQVIRSKSTDSLPYHLIVATFLVSLQWLIYGLML
QDPFIQAPNFLGCVLSGLQLSLFLIYPAKAHGASVI

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   208

Alignment file: J3JYD4.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  J3JYD4_inward.pdb

Procheck score ⇒ Ramachandran plot: 90.5% favored    5.8% allowed    3.2% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  J3JYD4_outward.pdb

Procheck score ⇒ Ramachandran plot: 94.7% favored    3.7% allowed    1.6% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  J3JYD4_occluded.pdb

Procheck score ⇒ Ramachandran plot: 89.4% favored    7.9% allowed    1.6% week    1.1% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur