Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : I3SYF2

dbSWEET id: dbswt_555

Accession:   I3SYF2

Uniprot status:   Unreviewed

Organism:   Lotus japonicus

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ fabids ⇒ Fabales ⇒ Fabaceae ⇒ Papilionoideae ⇒ Loteae ⇒ Lotus.

Sequence Information back to top


Sequence length:   269

Substrate Binding Site:   CNWS           CVV:   418       CHI:   -2.7

Selectivity Filter:   LNMA           CVV:   411       CHI:   4

Fasta sequence:

>tr|I3SYF2|I3SYF2_LOTJA|Unreviewed|Lotus_japonicus|269
MAEHFRMVVAVIGNVASVSLYAAPTVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGL
PVVSNKWENFPLVTVNGVGIVFELSYVLIYFWYSSAKQKVKVATTAIPVILVFCAIALVS
AFNFPDHRHRKLLVGSVGLGVAVAMYASPLVAMKKVIQTKSVEFMPLPLSLCSFLASVLW
LTYGLLIQDIFVAGPSLVGTPLSILQLVLHCKYWKRREMKEPINNKVELHKENMEKLDLE
KGGLFETKDIEEKNVTILNNDINSKNMTM

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   215

Alignment file: I3SYF2.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  I3SYF2_inward.pdb

Procheck score ⇒ Ramachandran plot: 84.7% favored    11.1% allowed    2.1% week    2.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  I3SYF2_outward.pdb

Procheck score ⇒ Ramachandran plot: 90.5% favored    7.4% allowed    2.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  I3SYF2_occluded.pdb

Procheck score ⇒ Ramachandran plot: 90.5% favored    7.4% allowed    1.1% week    1.1% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur