Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : I1JDK7

dbSWEET id: dbswt_254

Accession:   I1JDK7

Uniprot status:   Unreviewed

Organism:   Glycine max

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ fabids ⇒ Fabales ⇒ Fabaceae ⇒ Papilionoideae ⇒ Phaseoleae ⇒ Glycine ⇒ Soja.

Sequence Information back to top


Sequence length:   262

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VSVC           CVV:   369       CHI:   10.1

Fasta sequence:

>tr|I1JDK7|I1JDK7_SOYBN|Unreviewed|Glycine_max|262
MVSISDHELVLIFGLLGNIVSFMVFLAPLPTFYTIYKKKSSEGFQSIPYAVALLSALLLL
YYGFIKTNATLIITINCIGCVIEVSYLTMYIIYAPRKQKISTLVMILIADIGGFGLTMLI
TTFAVKGINRVHAVGWICAIFNIAVFAAPLSIMRRVIKTKSVEFMPFSLSLFLTLCATMW
FFYGFFDKDDFIMFPNVLGFIFGISQMILYMIYKNSKKNGETNCTEQQESEGTVNSKQHS
CDGNKLDFPSLVEMKENQLNQV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   3     Model end:   215

Alignment file: I1JDK7.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  I1JDK7_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.7% favored    4.2% allowed    1.1% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  I1JDK7_outward.pdb

Procheck score ⇒ Ramachandran plot: 93.7% favored    5.8% allowed    .5% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  I1JDK7_occluded.pdb

Procheck score ⇒ Ramachandran plot: 92.1% favored    6.3% allowed    .5% week    1.1% disallowed

Gene Informationback to top


Gene ID:   100306393     Total Exons:   6     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0051119 - sugar transmembrane transporter activity

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur