Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : I1I8Z2

dbSWEET id: dbswt_66

Accession:   I1I8Z2

Uniprot status:   Unreviewed

Organism:   Brachypodium distachyon

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ Liliopsida ⇒ Poales ⇒ Poaceae ⇒ BOP clade ⇒ Pooideae ⇒ Brachypodieae ⇒ Brachypodium.

Sequence Information back to top


Sequence length:   299

Substrate Binding Site:   SNWN           CVV:   428       CHI:   -8.7

Selectivity Filter:   VSVS           CVV:   356       CHI:   6.8

Fasta sequence:

>tr|I1I8Z2|I1I8Z2_BRADI|Unreviewed|Brachypodium_distachyon|299
MAAGFLSMAHPAITLSGIAGNVISFLVFLAPVTTFVQVVRKKTTGGFSAVPYVVALFSST
LWILYALLKGNSRPLLTINGFGCGVELAYVVAYLLYAPRKARLRALAYFLALDVAAFAIV
AAVALLGVAPEHRVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPISLSFCLVLSA
VAWFCYGYFTKDPYVMYPNVGGFFFSCVQMGLYFYYRRPSNAAVLPTTADGATGGGAVQA
QVIELPPHAVAILSVSNIPILGMHKIEVMAAPEQQDAKAADIVDKAAPAPEAVEIAGTV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   6     Model end:   218

Alignment file: I1I8Z2.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  I1I8Z2_inward.pdb

Procheck score ⇒ Ramachandran plot: 91.9% favored    7.0% allowed    1.1% week    .0% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  I1I8Z2_outward.pdb

Procheck score ⇒ Ramachandran plot: 94.6% favored    3.8% allowed    1.6% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  I1I8Z2_occluded.pdb

Procheck score ⇒ Ramachandran plot: 91.9% favored    7.0% allowed    1.1% week    .0% disallowed

Gene Informationback to top


Gene ID:   100842461     Total Exons:   5     Coding Exons:   5

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005887 - integral component of plasma membrane

GO:0008515 - sucrose transmembrane transporter activity

GO:0051119 - sugar transmembrane transporter activity

GO:0008643 - carbohydrate transport

GO:0006825 - copper ion transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur