Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : H8K336

dbSWEET id: dbswt_2004

Accession:   H8K336

Uniprot status:   Unreviewed

Organism:   Rickettsia amblyommii

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Proteobacteria ⇒ Alphaproteobacteria ⇒ Rickettsiales ⇒ Rickettsiaceae ⇒ Rickettsieae ⇒ Rickettsia ⇒ spotted fever group.

Sequence Information back to top


Sequence length:   88

Substrate Binding Site:   LNLN           CVV:   440       CHI:   0.6

Selectivity Filter:   IAIA           CVV:   382       CHI:   12.6

Fasta sequence:

>tr|H8K336|H8K336_RICAG|Unreviewed|Rickettsia amblyommii|88
MSPKFMTFYEKYMTIVGTIGNFMFYIQAHRICTCQSSASVSMPAFTISAIALCSWLIYGI
LIKNTPIIIANIVGFIGALLVLLTIIIY

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   13     Model end:   87

Inward Open:

Template:   4X5M.pdb

Model structure:  H8K336_inward.pdb    Alignment file: H8K336_inw.pir

Procheck score ⇒ Ramachandran plot: 93.8% favored    6.2% allowed    .0% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  H8K336_outward.pdb    Alignment file: H8K336_out.pir

Procheck score ⇒ Ramachandran plot: 89.2% favored    8.5% allowed    2.3% week    .0% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  H8K336_occluded.pdb    Alignment file: H8K336_occ.pir

Procheck score ⇒ Ramachandran plot: 93.8% favored    5.4% allowed    .8% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur