Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : E1L6M2

dbSWEET id: dbswt_1725

Accession:   E1L6M2

Uniprot status:   Unreviewed

Organism:   Veillonella atypica

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Firmicutes ⇒ Negativicutes ⇒ Veillonellales ⇒ Veillonellaceae ⇒ Veillonella.

Sequence Information back to top


Sequence length:   88

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   SNSN           CVV:   338       CHI:   -8.6

Fasta sequence:

>tr|E1L6M2|E1L6M2_9FIRM|Unreviewed|Veillonella atypica|88
MTRIKFMENVGKVATVTAVAMYVSYFPQIMNNLAHPGTGDWIQPLVAAINCTLWVAYGLF
KEHRDIPVALANAPGIFFGLAAAITALM

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   88

Inward Open:

Template:   4X5M.pdb

Model structure:  E1L6M2_inward.pdb    Alignment file: E1L6M2_inw.pir

Procheck score ⇒ Ramachandran plot: 95.4% favored    4.6% allowed    .0% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  E1L6M2_outward.pdb    Alignment file: E1L6M2_out.pir

Procheck score ⇒ Ramachandran plot: 85.4% favored    12.3% allowed    2.3% week    .0% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  E1L6M2_occluded.pdb    Alignment file: E1L6M2_occ.pir

Procheck score ⇒ Ramachandran plot: 92.3% favored    6.9% allowed    .0% week    .8% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur