Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : D5GZ40

dbSWEET id: dbswt_1708

Accession:   D5GZ40

Uniprot status:   Unreviewed

Organism:   Lactobacillus crispatus

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Firmicutes ⇒ Bacilli ⇒ Lactobacillales ⇒ Lactobacillaceae ⇒ Lactobacillus.

Sequence Information back to top


Sequence length:   88

Substrate Binding Site:   SNSN           CVV:   338       CHI:   -8.6

Selectivity Filter:   SNSN           CVV:   338       CHI:   -8.6

Fasta sequence:

>tr|D5GZ40|D5GZ40_LACCS|Unreviewed|Lactobacillus crispatus|88
MKKQDKYFLIIGRIASIMSVLMYVSYIAQIIANFQGQKGNPIQPFVAALNSTLWVLYGWM
NPVKRDWPIIIANIPGIFLGFITGITSL

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   12     Model end:   89

Inward Open:

Template:   4X5M.pdb

Model structure:  D5GZ40_inward.pdb    Alignment file: D5GZ40_inw.pir

Procheck score ⇒ Ramachandran plot: 90.6% favored    7.0% allowed    2.3% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  D5GZ40_outward.pdb    Alignment file: D5GZ40_out.pir

Procheck score ⇒ Ramachandran plot: 86.7% favored    10.9% allowed    1.6% week    .8% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  D5GZ40_occluded.pdb    Alignment file: D5GZ40_occ.pir

Procheck score ⇒ Ramachandran plot: 91.4% favored    7.8% allowed    .8% week    .0% disallowed

Gene Informationback to top


Gene ID:   9106679

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur