Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : D0GMR6

dbSWEET id: dbswt_1688

Accession:   D0GMR6

Uniprot status:   Unreviewed

Organism:   Leptotrichia goodfellowii

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Fusobacteria ⇒ Fusobacteriales ⇒ Leptotrichiaceae ⇒ Leptotrichia.

Sequence Information back to top


Sequence length:   87

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   ASAS           CVV:   280       CHI:   2

Fasta sequence:

>tr|D0GMR6|D0GMR6_9FUSO|Unreviewed|Leptotrichia goodfellowii|87
MDKKKINTIVGSIGAFIGIFVFIAYIPQIIANIQGVKAQPWQPLFASFSCLIWVVYGWTK
EPQKDYILIIPNTAGVILGFLTFITAF

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   88

Inward Open:

Template:   4X5M.pdb

Model structure:  D0GMR6_inward.pdb    Alignment file: D0GMR6_inw.pir

Procheck score ⇒ Ramachandran plot: 85.9% favored    11.7% allowed    2.3% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  D0GMR6_outward.pdb    Alignment file: D0GMR6_out.pir

Procheck score ⇒ Ramachandran plot: 91.4% favored    6.2% allowed    .8% week    1.6% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  D0GMR6_occluded.pdb    Alignment file: D0GMR6_occ.pir

Procheck score ⇒ Ramachandran plot: 89.8% favored    9.4% allowed    .8% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur