Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : C8W8P4

dbSWEET id: dbswt_1678

Accession:   C8W8P4

Uniprot status:   Unreviewed

Organism:   Atopobium parvulum

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Actinobacteria ⇒ Coriobacteriia ⇒ Coriobacteriales ⇒ Atopobiaceae ⇒ Atopobium.

Sequence Information back to top


Sequence length:   87

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   ASAS           CVV:   280       CHI:   2

Fasta sequence:

>tr|C8W8P4|C8W8P4_ATOPD|Unreviewed|Atopobium parvulum|87
MTKKQINLFVGSIGAFIGVFVFIAYIPQIIANLQGVKAQPFQPLFAAVSCLIWVIYGWTK
EPKKDWILIIPNTAGVILGGLTFLTAL

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   88

Inward Open:

Template:   4X5M.pdb

Model structure:  C8W8P4_inward.pdb    Alignment file: C8W8P4_inw.pir

Procheck score ⇒ Ramachandran plot: 91.3% favored    7.1% allowed    1.6% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  C8W8P4_outward.pdb    Alignment file: C8W8P4_out.pir

Procheck score ⇒ Ramachandran plot: 88.1% favored    8.7% allowed    1.6% week    1.6% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  C8W8P4_occluded.pdb    Alignment file: C8W8P4_occ.pir

Procheck score ⇒ Ramachandran plot: 92.9% favored    5.6% allowed    .0% week    1.6% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur