Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : C7M8B9

dbSWEET id: dbswt_1664

Accession:   C7M8B9

Uniprot status:   Unreviewed

Organism:   Capnocytophaga ochracea

Kingdom:   Bacteria

Taxonomy back to top


Bacteria ⇒ Bacteroidetes ⇒ Flavobacteriia ⇒ Flavobacteriales ⇒ Flavobacteriaceae ⇒ Capnocytophaga.

Sequence Information back to top


Sequence length:   87

Substrate Binding Site:   CNCN           CVV:   364       CHI:   -2

Selectivity Filter:   SNSN           CVV:   338       CHI:   -8.6

Fasta sequence:

>tr|C7M8B9|C7M8B9_CAPOD|Unreviewed|Capnocytophaga ochracea|87
MENGKLFNILGWVAMAASISMYVSYIPQISDNLAGHKGNPIQPLVAAINCSLWVIYGFFK
KPKRDYPILLANLPGIVFGLFAFATAL

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   11     Model end:   88

Inward Open:

Template:   4X5M.pdb

Model structure:  C7M8B9_inward.pdb    Alignment file: C7M8B9_inw.pir

Procheck score ⇒ Ramachandran plot: 93.0% favored    5.5% allowed    1.6% week    .0% disallowed

Outward Open:

Template:   4X5N.pdb

Model structure:  C7M8B9_outward.pdb    Alignment file: C7M8B9_out.pir

Procheck score ⇒ Ramachandran plot: 96.1% favored    3.9% allowed    .0% week    .0% disallowed

Occluded:

Template:   4QNC.pdb      4RNG.pdb

Model structure:  C7M8B9_occluded.pdb    Alignment file: C7M8B9_occ.pir

Procheck score ⇒ Ramachandran plot: 91.4% favored    6.2% allowed    2.3% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur