Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A7SFC4

dbSWEET id: dbswt_1112

Accession:   A7SFC4

Uniprot status:   Unreviewed

Organism:   Nematostella vectensis

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Cnidaria ⇒ Anthozoa ⇒ Hexacorallia ⇒ Actiniaria ⇒ Edwardsiidae ⇒ Nematostella.

Sequence Information back to top


Sequence length:   225

Substrate Binding Site:   SSWN           CVV:   405       CHI:   -6

Selectivity Filter:   MSVV           CVV:   407       CHI:   9.5

Fasta sequence:

>tr|A7SFC4|A7SFC4_NEMVE|Unreviewed|Nematostella_vectensis|225
MDAKALLSWTATISQFGMLLSGAQICLRIQRQGSTGDVAVLPFLATCASSILWTKYGLLT
KDFPITVISAAGIIFQSLYLLIFYLNSRDKKTLNPKLFWSFCLVCGVLSYIKYHVMDKET
AVFHLGLVCSVFSVAVYGSPLVSLATVIRKKSTECLTFSLCLANFLVSLQWAMYGKLAQD
NFITVPNSVGALLGSLQLSLFVCYPSTPQRTVTYTPGSKPSSWEV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   206

Alignment file: A7SFC4.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A7SFC4_inward.pdb

Procheck score ⇒ Ramachandran plot: 86.6% favored    12.4% allowed    1.1% week    .0% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A7SFC4_outward.pdb

Procheck score ⇒ Ramachandran plot: 89.8% favored    8.6% allowed    1.1% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A7SFC4_occluded.pdb

Procheck score ⇒ Ramachandran plot: 88.7% favored    10.8% allowed    .5% week    .0% disallowed

Gene Informationback to top


Gene ID:   5509141     Total Exons:   7     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0051119 - sugar transmembrane transporter activity

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur