Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A0V1I9W4

dbSWEET id: dbswt_1290

Accession:   A0A0V1I9W4

Uniprot status:   Unreviewed

Organism:   Trichinella pseudospiralis

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Ecdysozoa ⇒ Nematoda ⇒ Enoplea ⇒ Dorylaimia ⇒ Trichocephalida ⇒ Trichinellidae ⇒ Trichinella.

Sequence Information back to top


Sequence length:   867

Substrate Binding Site:   SNVN           CVV:   370       CHI:   -3.6

Selectivity Filter:   LGCI           CVV:   382       CHI:   10.4

Fasta sequence:

>tr|A0A0V1I9W4|A0A0V1I9W4_TRIPS|Unreviewed|Trichinella_pseudospiralis|867
MNSTSVPLKEQLQIFYKDFPKSLLRHLNFFDLLCTSIGINIFFLGLAALSNIRRWKKRGK
SDQDFFLPFILAWIGSFLWTVYGFLVTNWQIELVNGYLTAANSVVLIALYIYRIRKKSLA
AVIFITGLAAGSLLLLLTQLPNITSVHLVGSICSCMQIGCACTMLYMIVLAIKKKRIDFI
PFPPVAQIFNIEFQVTLYSIWIEDFYLLISNGIFMTIDGLVFLLFFIYPSEPTHMPLSAH
CPLQPESMFRESKTCQSIPPRDQHLYVASNNNGRYRHSTGNAADAGQASSSTKLTQVKPR
INLSLDSDDNTMKLQKSRADNSEYFSKSESDCTSDNGSRLNILPVRRKSSKRLLPPTPVC
IANDLKESVIDSEDDSYPSKESQLTDELYSSDICDSSTPSSTGDATNFLTIHSSRRRSRI
LPTAPIPQVSRRSVELSLSPRYGTQNAEDFLKPPNEAERRHSASNVLHASKIVSSRKPSI
DSESLESFFDKCSLSSSKSGQAKADDNESHTSAYLLHKKSSTKPATSRKVSRNASSIEIR
PIYGKTPPASSSVPDIAKQRIVTPVGQEAKRGSWPGLLPKEGTTFSSGFGFLHFSIQYFP
VRKRLRVLVIKAEGLILPIKRDIVLNTFLKIFLSPGKQQKQRSRRLIKHAEDTVYNEEFF
FVNITEEDIKTKSVEIRLCNHATKQFHNDRVIGEVKLPLHAVPQLWSKQEIHFIRNLSPK
QVKKLGRIHLGITLEASARRLTINIAKIDDLPKYGIYGPPDPYVRITLNQNQVTQSKQTR
TLKNTCNPVFREAVMFLVSVGEEDLENTSLVVSVMDALRPSCPSSVIGEVILSKSAEEKS
CAEQWRMMLASPGKEIKASHTLENPSE

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   23     Model end:   230

Alignment file: A0A0V1I9W4.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A0V1I9W4_inward.pdb

Procheck score ⇒ Ramachandran plot: 88.3% favored    8.0% allowed    2.1% week    1.6% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A0V1I9W4_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.0% favored    8.0% allowed    .0% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A0V1I9W4_occluded.pdb

Procheck score ⇒ Ramachandran plot: 91.0% favored    6.9% allowed    1.1% week    1.1% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF00168: C2. PF03083: MtN3_slv 

Interpro:   IPR000008: C2_dom. IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur