Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A0V1CF83

dbSWEET id: dbswt_1284

Accession:   A0A0V1CF83

Uniprot status:   Unreviewed

Organism:   Trichinella britovi

Kingdom:   Metazoa

Taxonomy back to top


Eukaryota ⇒ Metazoa ⇒ Ecdysozoa ⇒ Nematoda ⇒ Enoplea ⇒ Dorylaimia ⇒ Trichocephalida ⇒ Trichinellidae ⇒ Trichinella.

Sequence Information back to top


Sequence length:   860

Substrate Binding Site:   SNVD           CVV:   365       CHI:   -3.6

Selectivity Filter:   LGCI           CVV:   382       CHI:   10.4

Fasta sequence:

>tr|A0A0V1CF83|A0A0V1CF83_TRIBR|Unreviewed|Trichinella_britovi|860
MNSTSVPLEKQLQILYKDFPKSLLRHLNFFDLLCTSIGINIFFLGLAALSNIRRWKMRGK
SDQDFFLPFILAWIGSFLWTVYGFLVTNWQIELVNGYLTAANSVVLIALYIYRIRKKSLA
AVIFITGLATGSLLLLLAQLPNITSVHLVGSICSCIQIGCACTMLYMIVLAIKKKRIDFI
PFPPVAQIFNIEFQVTLYSIWIEDFYLLVIDALVLIIGLFNSRLVKHMPLSARCPLQPES
MFRESKTCQSIPPRDQHLYVASNNNGRYRHSTGNAADAGQASSSTKLTQVKPRINLSLDS
DDNSMKLQKSHGDNSEYFSKSESDCTSDNGNRLNILPVRRKSSKRLLPPTPVCIANDLKE
SVIDSEDDSYPSKESQLTDELYSSDICDSSTPSSTGDVTNFLTIHSSRRRSRILPTAPMP
QISRRSVELSLSPRYGTHNAEDFLKPPNEAERRHSASNVLHASKMVSTRKPSIDSESLES
FFDKCSLSSSKSMQAKADDNESHTSAHLLHKKTSTKLASSRKVSRNASSIEIRPIYGKIP
PASSSVPDIAKQRIVTPVGQEAKRGSWPGLLSKEGTSFSSGFGFLHFSIQYFPVRKRLRV
LVIKAEGLILPTKRDIVLNTFLKIFLSPGKQQKQRSRRLIKHAEDAVYNEEFFFVNITED
DIKTKSVEIRLCNHATKQFHNDRVIGEVKLPLHAVPQLWSKQEIHFIRNLSPKQVKKLGR
IHLGITLEASARRLTINVAKIDDLPKYGIYGPPDPYVRITLNQKQVTQSKQTRTLKNTCN
PVFKEAVMFLVSVGEEDLENTSLVVSVMDALRPSCPSSVIGEIILSKGAEEKSCAEQWRM
MLASPGKEIKASHTLKSPSE

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   65     Model end:   230

Alignment file: A0A0V1CF83.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A0V1CF83_inward.pdb

Procheck score ⇒ Ramachandran plot: 86.6% favored    10.7% allowed    2.1% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A0V1CF83_outward.pdb

Procheck score ⇒ Ramachandran plot: 89.3% favored    8.6% allowed    1.6% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A0V1CF83_occluded.pdb

Procheck score ⇒ Ramachandran plot: 88.2% favored    10.2% allowed    1.6% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF00168: C2. PF03083: MtN3_slv. 

Interpro:   IPR000008: C2_dom. IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur