Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A0D9YA55

dbSWEET id: dbswt_610

Accession:   A0A0D9YA55

Uniprot status:   Unreviewed

Organism:   Oryza glumipatula

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ Liliopsida ⇒ Poales ⇒ Poaceae ⇒ BOP clade ⇒ Oryzoideae ⇒ Oryzeae ⇒ Oryzinae ⇒ Oryza.

Sequence Information back to top


Sequence length:   240

Substrate Binding Site:   CNFN           CVV:   413       CHI:   -1.7

Selectivity Filter:   SNMM           CVV:   417       CHI:   -0.5

Fasta sequence:

>tr|A0A0D9YA55|A0A0D9YA55_9ORYZ|Unreviewed|Oryza_glumipatula|240
MALGLQVLPLLLLRLLPILSISLFPFLGYFDALSFLASWPTFKRIVRNGSTEQFSAMPYI
YSLLNCLICLWYGLPFVSYGVVLVATVNSIGALFQLAYTATFIAFADAKNRVKVSSLLVM
VFGVFALIVYVSLALFDHQTRQLFVGYLSVASLIFMFASPLSIINLVIRTKSVEYMPFYL
SLSMFLMSVSFFAYGVLLHDFFIYIPNGIGTVLGVIQLVLYGYFRKGSREDSLPLLVTHT

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   13     Model end:   226

Alignment file: A0A0D9YA55.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A0D9YA55_inward.pdb

Procheck score ⇒ Ramachandran plot: 95.8% favored    3.7% allowed    .0% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A0D9YA55_outward.pdb

Procheck score ⇒ Ramachandran plot: 93.7% favored    5.2% allowed    1.0% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A0D9YA55_occluded.pdb

Procheck score ⇒ Ramachandran plot: 94.2% favored    5.2% allowed    .0% week    .5% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur