Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A0D9VF45

dbSWEET id: dbswt_822

Accession:   A0A0D9VF45

Uniprot status:   Unreviewed

Organism:   Leersia perrieri

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ Liliopsida ⇒ Poales ⇒ Poaceae ⇒ BOP clade ⇒ Oryzoideae ⇒ Oryzeae ⇒ Oryzinae ⇒ Leersia.

Sequence Information back to top


Sequence length:   336

Substrate Binding Site:   CNWN           CVV:   441       CHI:   -5.4

Selectivity Filter:   LNMN           CVV:   440       CHI:   -1.3

Fasta sequence:

>tr|A0A0D9VF45|A0A0D9VF45_9ORYZ|Unreviewed|Leersia_perrieri|336
MGATTKEFRPGSDLTLYLRPLLLLTPSHNSTSDGILLLPVLVPVRLLHLQFRPAAARLSS
LLAPPRRTPDAGNERVFVVARAATMTISPDTIRTAIGVVGNGTALVLFLSPVPTFIRIWK
KGSVEQYSAVPYVATLLNCMMWVLYGLPAVHPHSMLVITINGTGMAIELTYIALFLAFSA
GAVRRRVLLLLAAEVAFVAAVAALVLSLAHTHDRRSMIVGILCVLFGTGMYAAPLSVMKM
VIQTKSVEYMPLFLSLASLVNGICWTAYALIRFDLYITIPNGLGVMFAIAQLILYAIYYK
STQQIMEARKRKADQAVAMTEVVVDSSAAAKNGGHY

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   86     Model end:   300

Alignment file: A0A0D9VF45.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A0D9VF45_inward.pdb

Procheck score ⇒ Ramachandran plot: 92.6% favored    6.9% allowed    .0% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A0D9VF45_outward.pdb

Procheck score ⇒ Ramachandran plot: 92.1% favored    6.3% allowed    1.1% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A0D9VF45_occluded.pdb

Procheck score ⇒ Ramachandran plot: 94.2% favored    4.2% allowed    1.1% week    .5% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur