Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A096RPG6

dbSWEET id: dbswt_473

Accession:   A0A096RPG6

Uniprot status:   Unreviewed

Organism:   Zea mays

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ Liliopsida ⇒ Poales ⇒ Poaceae ⇒ PACMAD clade ⇒ Panicoideae ⇒ Andropogonodae ⇒ Andropogoneae ⇒ Tripsacinae ⇒ Zea.

Sequence Information back to top


Sequence length:   238

Substrate Binding Site:   ANWN           CVV:   422       CHI:   -6.1

Selectivity Filter:   VNMN           CVV:   421       CHI:   -0.9

Fasta sequence:

>tr|A0A096RPG6|A0A096RPG6_MAIZE|Unreviewed|Zea_mays|238
MDSTLFIIGVIGNIISVLVFISPIKTFWRIVRSGSTEEFEPAPYVFTLLNALLWLYYGAT
KPDGLLVATVNGFGAAMEAIYVVLFIVYAANHATRVKTAKLAAALDIGGFGVVFVATTFA
INELNMRIMVIGMICACLNVLMYGSPLAAMKTVITTKSVEFMPFFLSFFLFLNGGIWATY
AVLDRDIFLGIPNGIGFILGTIQLIIYAIYMNSKVSQSSKEIASPLLASSQEEAASHV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   212

Alignment file: A0A096RPG6.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A096RPG6_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.5% favored    3.8% allowed    1.6% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A096RPG6_outward.pdb

Procheck score ⇒ Ramachandran plot: 90.8% favored    7.1% allowed    1.6% week    .5% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A096RPG6_occluded.pdb

Procheck score ⇒ Ramachandran plot: 91.8% favored    6.0% allowed    .5% week    1.6% disallowed

Gene Informationback to top


Gene ID:   103650117     Total Exons:   6     Coding Exons:   6

The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).

If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur