Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A087GDR1

dbSWEET id: dbswt_885

Accession:   A0A087GDR1

Uniprot status:   Unreviewed

Organism:   Arabis alpina

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Arabideae ⇒ Arabis.

Sequence Information back to top


Sequence length:   240

Substrate Binding Site:   CNWN           CVV:   441       CHI:   -5.4

Selectivity Filter:   LNMN           CVV:   440       CHI:   -1.3

Fasta sequence:

>tr|A0A087GDR1|A0A087GDR1_ARAAL|Unreviewed|Arabis_alpina|240
MTDAHTARTIVGIIGNVISFGLFCAPIPTIAKIWKMKSVSEFKPDPYVATVLNCMMWTFY
GLPFVHPDSLLVITINGTGLFMELVYVTIFFIFASASVRKKITIAMVIEVIFMALVVFCT
LYFLHTTKQRSMLIGILCIVFNVIMYAAPLTVMKLVIQTKSVKYMPFFLSLANLMNGVVW
VIYACLKFDPYILIPNGLGTLSGITQLVLYATYYKTTNWNEDDEDKEKRYSNAEIELGKA

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   215

Alignment file: A0A087GDR1.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A087GDR1_inward.pdb

Procheck score ⇒ Ramachandran plot: 95.8% favored    3.1% allowed    1.0% week    .0% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A087GDR1_outward.pdb

Procheck score ⇒ Ramachandran plot: 94.8% favored    4.7% allowed    .5% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A087GDR1_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.2% favored    4.2% allowed    1.0% week    1.6% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur