Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A078H3E4

dbSWEET id: dbswt_643

Accession:   A0A078H3E4

Uniprot status:   Unreviewed

Organism:   Brassica napus

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Brassiceae ⇒ Brassica.

Sequence Information back to top


Sequence length:   236

Substrate Binding Site:   CNFN           CVV:   413       CHI:   -1.7

Selectivity Filter:   LNMM           CVV:   468       CHI:   4.1

Fasta sequence:

>tr|A0A078H3E4|A0A078H3E4_BRANA|Unreviewed|Brassica_napus|236
MEFFTVDGSFSKWKDVAGIAGNIFAFGLFVSPMPTFRRIMRNKSTEQFSGLPYIYALLNC
LICLWYGSPYVSQRNFMLVTVNGVGATFQLCYIILFILHTDKKTKMRMLVLLLVVFAVVA
LIVVGSLQIPEKVTRWYLVGFMSCGSLVSMFASPLFVINLVIQTKSVEFMPFYLSLSTFL
MSASFFMFGIFNSDAFVYTPNGIGTVLGIVQLSLYCYFHRNSVEEETKEPLIVSYV

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   7     Model end:   220

Alignment file: A0A078H3E4.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A078H3E4_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.6% favored    4.8% allowed    1.1% week    .5% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A078H3E4_outward.pdb

Procheck score ⇒ Ramachandran plot: 94.1% favored    4.8% allowed    1.1% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A078H3E4_occluded.pdb

Procheck score ⇒ Ramachandran plot: 92.0% favored    6.9% allowed    .5% week    .5% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur