Basic Information |
Taxanomy |
Sequence Information |
Modeled Structures |
Gene Information |
Gene Ontology |
Family Classification |
Details : A0A078FDJ6
dbSWEET id: dbswt_11
Accession: A0A078FDJ6
Uniprot status: Unreviewed
Organism: Brassica napus
Kingdom: Plantae
Taxonomy back to top
Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ rosids ⇒ malvids ⇒ Brassicales ⇒ Brassicaceae ⇒ Brassiceae ⇒ Brassica.
Sequence Information back to top
Sequence length: 273
Substrate Binding Site: ANWN CVV: 422 CHI: -6.1
Selectivity Filter: VSVS CVV: 356 CHI: 6.8
Fasta sequence:
>tr|A0A078FDJ6|A0A078FDJ6_BRANA|Unreviewed|Brassica_napus|273
MALNVLAFTFGIMGNIISFIVFLAPVPTFVRICKKKSIEGFQSLPYVSALFSAMLWIYYA
LQKDGSGFLLITINAVGCFIETIYIILFITYANKKARISTLKVLGLLNFLGFAAIILVCE
LLTKKSNREKVLGGICVGFSVCVFAAPLSIMRVVIRTKSVEFMPFSLSLFLTLSAITWLF
YGLAIKDFYVALPNILGAFLGAVQMILYIIFKYYKAPKVDDTEKPKTVQDHSIDMVKLTS
TTPVSGDMTVHPQTHAGDLEGQMEKKVTNQIQT
Snake diagram with key positions labelled
Modeled Structuresback to top
Model start: 1 Model end: 213
Alignment file: A0A078FDJ6.pir
Inward Open:
Template: 5CTG.pdb
Model structure: A0A078FDJ6_inward.pdb
Procheck score ⇒ Ramachandran plot: 92.6% favored 6.3% allowed 1.1% week .0% disallowed
Outward Open:
Template: 5CTG_outward.pdb
Model structure: A0A078FDJ6_outward.pdb
Procheck score ⇒ Ramachandran plot: 92.6% favored 5.8% allowed 1.6% week .0% disallowed
Occluded:
Template: 5CTG_occluded.pdb
Model structure: A0A078FDJ6_occluded.pdb
Procheck score ⇒ Ramachandran plot: 91.6% favored 6.8% allowed 1.1% week .5% disallowed
Gene Informationback to top
Gene ID: 106360071 Total Exons: 6 Coding Exons: 6
The diagram below shows the position of Exon-junctions in the protein structure ( Loops and transmembrane helices ).
If more than 1 exon translates a single secondary-structure , only the final exon is represented in figure.
Point on the red bars to view exon number
Gene Ontologyback to top
GO:0016021 - integral component of membrane
GO:0005886 - plasma membrane
GO:0008643 - carbohydrate transport
Family Classificationback to top
Pfam: PF03083: MtN3_slv.
Interpro: IPR004316: SWEET_sugar_transpr.
Panther: NA