Details

Basic Information
Taxanomy
Sequence Information
Modeled Structures
Gene Information
Gene Ontology
Family Classification

Details : A0A068VC25

dbSWEET id: dbswt_489

Accession:   A0A068VC25

Uniprot status:   Unreviewed

Organism:   Coffea canephora

Kingdom:   Plantae

Taxonomy back to top


Eukaryota ⇒ Viridiplantae ⇒ Streptophyta ⇒ Embryophyta ⇒ Tracheophyta ⇒ Spermatophyta ⇒ Magnoliophyta ⇒ eudicotyledons ⇒ Gunneridae ⇒ Pentapetalae ⇒ asterids ⇒ lamiids ⇒ Gentianales ⇒ Rubiaceae ⇒ Ixoroideae ⇒ Coffeeae ⇒ Coffea.

Sequence Information back to top


Sequence length:   242

Substrate Binding Site:   SNWN           CVV:   428       CHI:   -8.7

Selectivity Filter:   MNMN           CVV:   440       CHI:   -3.2

Fasta sequence:

>tr|A0A068VC25|A0A068VC25_COFCA|Unreviewed|Coffea_canephora|242
METLILFVGIIGNIISVLMFLSPAKTFWRIVKRKSTEDFESLPYICTLLNSSLWTYYGIT
RPGSYLVATVNGFGVVVEIIYVSLFLIFAPPKMKGKTAVLAGALDVGFLAAAILATQFLT
TGDTRIDVIGYMSSGLNIIMYGSPLAAMKTVVTTKSVEYMPFLLSFFLFLNGGIWTIYAV
LVQDWFLGVPNGIGFVLGTAQLVLYAIYRNAKPSYSASADLEQASERQSLLPPSASGHTS
HG

Snake diagram with key positions labelled



Modeled Structuresback to top


Model start:   1     Model end:   210

Alignment file: A0A068VC25.pir

Inward Open:

Template:   5CTG.pdb

Model structure:  A0A068VC25_inward.pdb

Procheck score ⇒ Ramachandran plot: 93.3% favored    4.4% allowed    1.1% week    1.1% disallowed

Outward Open:

Template:   5CTG_outward.pdb

Model structure:  A0A068VC25_outward.pdb

Procheck score ⇒ Ramachandran plot: 95.0% favored    3.3% allowed    1.7% week    .0% disallowed

Occluded:

Template:   5CTG_occluded.pdb

Model structure:  A0A068VC25_occluded.pdb

Procheck score ⇒ Ramachandran plot: 93.3% favored    4.4% allowed    2.2% week    .0% disallowed

Gene Informationback to top


Not Available

Gene Ontologyback to top


GO:0016021 - integral component of membrane

GO:0005886 - plasma membrane

GO:0008643 - carbohydrate transport

Family Classificationback to top


Pfam:   PF03083: MtN3_slv. 

Interpro:   IPR004316: SWEET_sugar_transpr. 

Panther:   NA

Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, IIT Kanpur