|
STRUCTURE BASED ALIGNMENT |
| |
A conserved positions at helix-helix interface A
Ar/R selectivity filter
| Protein |
Helix 1 |
Helix 2 |
| 1J4N |
FWRAVVAEFLAMILFIFISIGSALGF |
DNVKVSLAFGLSIATLAQSVGH |
| 1FX8 |
LKGQCIAEFLGTGLLIFFGVGCVAAL |
GQWEISVIWGLGVAMAIYLTAG |
| 1RC2 |
MFRKLAAECFGTFWLVFGGCGSAVLA |
GFAGVALAFGLTVLTMAFAVGH |
| 1Z98 |
FWRAAIAEFIATLLFLYITVATVIGH |
GLLGIAWAFGGMIFVLVYCTAG |
| 2B60 |
FWRAIFAEFFATLFYVFFGLGASLRW |
HVLQVALAFGLALATLVQAVGH |
| 2F2B |
LTKRCIAEFIGTFILVFFGAGSAAVT |
DWVAIGLAFGFAIAASIYALGN |
| STPNEU0107 | ~MKKFVAELIGTFMFVFVGTGAVVFG | GHLGIAFAFGLAIVVAAYSIGT | | STPNEU0108 | MMNELFGEFLGTLILILLGNGVVAGV | GWIVITMGWGIAVAVAVFVSGK | | STPNEU0109 | WALKYATEFLGTAILIILGNGAVANV | GWIVIAVGYGMGVMIPALMFGN | | STPNEU0586 | MMNELFGEFLGTLILILLGNGVVAGV | GWIVITMGWGIAVAVAVFVSGK | | STPNEU0682 | ~MKKFVAELIGTFMLVFVGTGAVVFG | GHLGIAFAFGLAIVVAAYSIGT |
| Protein |
Helix 3 |
Helix 4 |
| 1J4N |
SVLRAIMYIIAQCVGAIVATAILSG |
SGQGLGIEIIGTLQLVLCVLATT
|
| 1FX8 |
DKRKVIPFIVSQVAGAFCAAALVYG |
FVQAFAVEMVITAILMGLILALT |
| 1RC2 |
PAKEVVGYVIAQVVGGIVAAALLYL |
MLSALVVELVLSAGFLLVIHGAT |
| 1Z98 |
SLLRALVYMIAQCLGAICGVGLVKA |
KGTALGAEIIGTFVLVYTVFSAT |
| 2B60 |
SLLRAICYVVAQLLGAVAGAAVLYS |
VGQATIVEIFLTLQFVLCIFATY |
| 2F2B |
PGREVVPYIIAQLLGAAFGSFIFLQ |
YWQAMLAEVVGTFLLMITIMGIA |
| STPNEU0107 | SSSELVNYILGQVVGAFIASGAVFF | VFGGFLFEVIATFLFVLVIMTVT | | STPNEU0108 | PWASVLPYILAQFAGAMLGQILVWL | TVSNLISEILGTFVLVLTIFALG | | STPNEU0109 | PWAQVVPYIIAQVLGAIFGQALVVA | TKNFFGAEVLQFMKQKATEAGQT | | STPNEU0586 | PWASVLPYILAQFAGAMLGQILVWL | TVSNLISEILGTFVLVLTIFALG | | STPNEU0682 | SSSELVNYILGQVVGAFIASGAVFF | VFGGFLFEVIATFLFVLVIMTVT |
| Protein |
Helix 5 |
Helix 6 |
| 1J4N |
SGPLAIGFSVALGHLLAID
|
WIFWVGPFIGAALAVLIYDFI
|
| 1FX8 |
LAPLLIGLLIAVIGASMGP |
LVPLFGPIVGAIVGAFAYRKL |
| 1RC2 |
FAPIAIGLALTLIHLISIP |
WFFWVVPIVGGIIGGLIYRTL |
| 1Z98 |
LAPLPIGFAVFMVHLATIP |
WIFWVGPFIGAAVAAAYHQYV |
| 2B60 |
SVALAVGFSLTLGHLFGMY |
WVYWVGPVIGAGLGSLLYDFL |
| 2F2B |
FAGIIIGLTVAGIITTLGN |
SIYVIGPIVGAVLAALTYQYL |
| STPNEU0107 | IAGLVIGLSLMAMILVGLK | WIFILAPIAGGVLAALVAKNF | | STPNEU0108 | IGTFAVGTLIVGIGLSLGG | WIPVVGPVIGAALAVLVFSLF | | STPNEU0109 | VAHLALGFLVMALVTSLGG | WVPVVAPIAAAIAAVAVFKFL | | STPNEU0586 | IGTFAVGTLIVGIGLSLGG | WIPVVGPVIGAALAVLVFSLF | | STPNEU0682 | IAGLVIGLSLMAMILVGLK | WIFILAPIAGGVLAALVAKNF |
| Protein |
Loop B |
Loop E |
| 1J4N |
AHLNPAVTLGLLLS |
GCGINPARSFGSSVIT |
| 1FX8 |
AHLNPAVTIALWLF |
GFAMNPARDFGPKVFA |
| 1RC2 |
GHFNPAVTIGLWAG |
NTSVNPARSTAVAI-F |
| 1Z98 |
GHINPAVTFGLFLA |
GTGINPARSFGAAVIF |
| 2B60 |
AHVNPAVTFAFLVG |
GAGMNPARSFAPAILT |
| 2F2B |
CHINPAVTIGLWSV |
GSSLNPARTFGPYLND |
| STPNEU0107 | AHLNPAVSIAMFVN | GLSVNPARSLAPAVLV | | STPNEU0108 | AYLNPAVTIGVALK | GYALNPARDLGPRIMH | | STPNEU0109 | NHINPAFTLGLAVS | GPALNPARDLGPRLLH | | STPNEU0586 | AHLNPAVTIGVALK | GYALNPARDLGPRIMH | | STPNEU0682 | AHLNPAVSIAMFVN | GLSVNPARSLAPAVLV |
|
