MIPModDB@IITKanpur



	MIPModDB

SPROSE1528

ACCESSION NUMBER

ORGANISM

: Sporobolomyces roseus

ANNOTATION

PDB ID

: 24618

GENE STRUCTURE

Exons

Introns

Helix start position

Loop B and Loop E start position

SEQUENCE BASED INFORMATION

Length of sequence	Length modeled		Similarity with templates (as calculated by NEEDLE program from EMBOSS Package)
	from	to	1J4N	1FX8	2F2B
588	279	538	36.8	44.7	40.1

View FASTA sequence

STRUCTURE BASED INFORMATION

Residues in selectivity filter	NPA motif		Root mean squared deviation with templates (as calculated by DALI program)
	I	II	1J4N	1FX8	2F2B
YIVR	SPA	NNA	2.2	1.9	1.6

Structure based alignment

View:

Structure superimposed with 1FX8
Structure superimposed with 1J4N

Downloads:

Alignment in PIR Format
Alignment in PAP Format
Modelled Structure in PDB Format
Radius profile along the channel

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Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering,
Indian Institute of Technology, Kanpur, INDIA-208016
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