MIPModDB
 
 

RASATI0626

    ACCESSION NUMBER :

    ORGANISM : Raphanus sativus
    ANNOTATION : Delta-VM23
    UNIPROT ACCESSION : O82142


GENE STRUCTURE

Gene structure for this protein is not available

    Exons      Introns   Helix start position   Loop B and Loop E start position

SEQUENCE BASED INFORMATION


Length of sequence Length modeled Similarity with templates
(as calculated by NEEDLE program from EMBOSS Package)
  from to 1J4N 1FX8 2F2B
248 8 245 53.1 43.8 47.2

STRUCTURE BASED INFORMATION


Residues in selectivity filter NPA motif Root mean squared deviation with templates
(as calculated by DALI program)
  I II 1J4N 1FX8 2F2B
HIGR NPA NPA 1.5 1.9 1.5


View:

Structure superimposed with 1FX8
Structure superimposed with 1J4N
Downloads:

Alignment in PIR Format
Alignment in PAP Format

Modelled Structure in PDB Format
Radius profile along the channel
 
 
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Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering,
Indian Institute of Technology, Kanpur, INDIA-208016
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